Publications of SMICH students 2019

Steinparzer, I., Sedlyarov, V., Rubin, J. D., Eislmayr, K., Galbraith, M. D., Levandowski, C. B., Vcelkova, T., Sneezum, L., Wascher, F., Amman, F., Kleinova, R., Bender, H., Andrysik, Z., Espinosa, J. M., Superti-Furga, G., Dowell, R. D., Taatjes, D. J., and Kovarik, P. (2019) Transcriptional Responses to IFN-gamma Require Mediator Kinase-Dependent Pause Release and Mechanistically Distinct CDK8 and CDK19 Functions. Mol Cell 76, 485-499 e488 PMID: 31495563

Elsner, D. J., Siess, K. M., Gossenreiter, T., Hartl, M., and Leonard, T. A. (2019) A ubiquitin-like domain controls protein kinase D dimerization and activation by trans-autophosphorylation. J. Biol. Chem. 294, 14422–14441

Siess, K. M. and Leonard, T. A. (2019) Lipid-dependent Akt-ivity: where, when, and how. Biochem. Soc. Trans. 47, 897–908, 10.1042/BST20190013

Hacker, K., Benke, S., Agerer, B., Scinicariello, S., Budroni, V., and Versteeg, G. A. (2019) A repetitive acidic region contributes to the extremely rapid degradation of the cell-context essential protein TRIM52. Sci Rep 9, 7901.

Benke, S., Agerer, B., Haas, L., Stoger, M., Lercher, A., Gabler, L., Kiss, I., Scinicariello, S., Berger, W., Bergthaler, A., Obenauf, A. C., and Versteeg, G. A. (2018) Human tripartite motif protein 52 is required for cell context-dependent proliferation. Oncotarget 9, 13565-13581

Hollenstein DM, Gómez-Sánchez R, Ciftci A, Kriegenburg F, Mari M, Torggler R, Licheva M, Reggiori F, Kraft C. (2019) Vac8 spatially confines autophagosome formation at the vacuole. J Cell Sci. 2019 Oct 24 PMID: 31649143

Turco, E., Witt, M., Abert, C., Bock-Bierbaum, T., Su, M.-Y., Trapannone, R., Sztacho, M., Danieli, A., Shi, X., Zaffagnini, G., Gamper, A., Schuschnig, M., Fracchiolla, D., Bernklau, D., Romanov, J., Hartl, M., Hurley, J. H., Daumke, O., and Martens, S. (2019) How RB1CC1/FIP200 claws its way to autophagic engulfment of SQSTM1/p62-ubiquitin condensates. Autophagy, 15, 1475-1477.

Turco E, Witt M, Abert C, Bock-Bierbaum T, Su MY, Trapannone R, Sztacho M, Danieli A , Shi X, Zaffagnini G, Gamper A, Schuschnig M, Fracchiolla D, Bernklau D , Romanov J, Hartl M, Hurley JH, Daumke O, Martens S. (2019)  FIP200 Claw Domain Binding to p62 Promotes Autophagosome Formation at Ubiquitin Condensates. Mol Cell. 2019 Apr 18;74(2):330-346.e11. PMID:  30853400

Publications of SMICH students 2018

Danieli, Alberto ; Martens, Sascha (2018)  p62-mediated phase separation at the intersection of the ubiquitin-proteasome system and autophagy. J CELL SCI;131(19).PMID: 30287680

Zaffagnini, Gabriele; Savova, Adriana; Danieli, Alberto; Romanov, Julia; Tremel, Shirley; Ebner, Michael; Peterbauer, Thomas; Sztacho, Martin; Trapannone, Riccardo; Tarafder, Abul K; Sachse, Carsten; Martens, Sascha (2018). p62 filaments capture and present ubiquitinated cargos for autophagy. EMBO J. PMID: 29343546

Orbán-Németh, Zsuzsanna; Beveridge, Rebecca; Hollenstein, David M; Rampler, Evelyn; Stranzl, Thomas; Hudecz, Otto; Doblmann, Johannes; Schlögelhofer, Peter; Mechtler, Karl (2018). Structural prediction of protein models using distance restraints derived from cross-linking mass spectrometry data. NAT PROTOC;13(3):478-494. PMID: 29419816

Benke, Stefan; Agerer, Benedikt; Haas, Lisa; Stöger, Martin; Lercher, Alexander; Gabler, Lisa; Kiss, Izabella; Scinicariello, SaraPhD students; Berger, Walter; Bergthaler, Andreas; Obenauf, Anna C and Versteeg, Gijs A. (2018). Human tripartite motif protein 52 is required for cell context-dependent proliferation Oncotarget;17(9):13565-13581. PMID: 29568378

Baumgartner, Christian; Toifl, Stefanie; Farlik, Matthias; Halbritter, Florian; Scheicher, Ruth; Fischer, Irmgard; Sexl, Veronika; Bock, Christoph; Baccarini, Manuela (2018). An ERK-Dependent Feedback Mechanism Prevents Hematopoietic Stem Cell Exhaustion. Cell stem cell.;22(6):879-892.e6. PMID: 29804890

Zaffagnini, Gabriele; Savova, Adriana; Danieli, Alberto; Romanov, Julia; Tremel, Shirley; Ebner, Michael; Peterbauer, Thomas; Sztacho, Martin; Trapannone, Riccardo; Tarafder, Abul K; Sachse, Carsten; Martens, Sascha (2018). Phasing out the bad-How SQSTM1/p62 sequesters ubiquitinated proteins for degradation by autophagy. AUTOPHAGY. PMID: 29929426

 

 

Publications of SMICH students 2017

Sanchez-Wandelmer, J., Kriegenburg, F., Rohringer, S., Schuschnig, M., Gomez-Sanchez, R., Zens, B., Abreu, S., Hardenberg, R., Hollenstein, D., Gao, J., Ungermann, C., Martens, S., Kraft, C., and Reggiori, F. (2017) Atg4 proteolytic activity can be inhibited by Atg1 phosphorylation. Nat Commun 8, 295.

Ivin, M., Dumigan, A., de Vasconcelos, F. N., Ebner, F., Borroni, M., Kavirayani, A., Przybyszewska, K. N., Ingram, R. J., Lienenklaus, S., Kalinke, U., Stoiber, D., Bengoechea, J. A., and Kovarik, P. (2017) Natural killer cell-intrinsic type I IFN signaling controls Klebsiella pneumoniae growth during lung infection. PLoS pathogens 13, e1006696.